rs29288362 SNP Detail

Summary

• ID
  rs29288362
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:141174808 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGTG TGCCTGGCTG AGAGCAGAAA
  Y
  GTCCAGCTTG TTTGAATGTT GTTCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	NZW/LacJ	PWD/PhJ
ss38482155	NES09760515	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	NZW/LacJ	PWD/PhJ
rs29288362					SNP	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38482155	NES09760515	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:141174808 () rs orientation: forward

Symbol	Name	Function Class
Acsl4	acyl-CoA synthetase long-chain family member 4	1277 bp upstream
Cpgi22977	CpG island 22977	922 bp distal
Gm61820	predicted gene, 61820	506 bp downstream
Rr8330	regulatory region 8330	407 bp distal
Tssr162237	transcription start site region 162237	1081 bp downstream
Tssr164293	transcription start site region 164293	1467 bp upstream
Tssr164294	transcription start site region 164294	1449 bp upstream
Tssr164295	transcription start site region 164295	1384 bp upstream
Tssr164296	transcription start site region 164296	1366 bp upstream
Tssr164297	transcription start site region 164297	1292 bp upstream
Tssr164298	transcription start site region 164298	1231 bp upstream
Tssr164299	transcription start site region 164299	1198 bp upstream