rs29288656 SNP Detail

Summary

• ID
  rs29288656
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:140256491 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCACCTGAA ATTGTCCTGA
  AGACATTCAC AAATGTGTGC ACCTTGCATT GTCTACCTCT AATTTTTGTT CTCTAAACCT
  ACAGGGATGT TTTAGGACAA GAAAAATGCT GAGTCCGGAG AGCATTAGGC TAATGTTATA
  CTTGCTATTC CTCTCCAGGA ACCCCATTAA GTCCTATTAG AAAGGCTCCA TTTGGTGCAA
  Y
  CCTCTGTTAC CCCCAACAGA AACACAAGAG GAAGAGGGGG AAAAAGGGGG TCTTTTGAAG
  CCTTACCGAT TCTGCCAGTT CTTTGGTCAA GCATAAGGAA ACCAGGAACA GCCACAATCT
  GAAAGGAGAG GGAGGGTGAG AAACATGGGC TCTCTGGACT ACAGGGTCCT GAGTGAGAAA
  GTGTTCCCCC GGGCTCCCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38484208	NES09772306	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29288656					SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38484208	NES09772306	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:140256491 () rs orientation: forward

Symbol	Name	Function Class
Col4a5	collagen, type IV, alpha 5	1890 bp upstream
Col4a6	collagen, type IV, alpha 6	within coordinates
Rr694032	regulatory region 694032	1538 bp proximal
Tssr162226	transcription start site region 162226	1890 bp upstream
Tssr164268	transcription start site region 164268	358 bp downstream
Tssr164269	transcription start site region 164269	385 bp downstream
Tssr164270	transcription start site region 164270	539 bp downstream