rs29288764 SNP Detail

Summary

• ID
  rs29288764
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:141173749 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCGGAGCGG GGGAGCTCGG
  TGGTGTGGCT GAGCCCGCCG AATCGCAGGC GGCCTCTGGC TCGGCCCACC CACACGCCCG
  CCTCCGCTCA CTAAGGACGT CACCGCCAAA AAGGCGGAGC CCGATCGGGC TTGCAGCTGC
  TGCAAAGGAG GAGGGCTGCT TCCGAAGGGT CGCAGGTCGC CTAAAGCCTC CCTTGAGCCC
  R
  CAGCCACCAT GCCGCTCCCG CAGTGCTGGG CAAAATAGCC CACGAGGGCT TAGCGCCCAG
  TAGTCTAGAG CCGCAGAACT GGCCCACGCC CTAGCGGGCT ACCCGGGACT CCACCCAGGA
  TGAAAGTTCC CCCGGGGTCA TCTTCCAGCT GCCCTTAGTT AGATACCTAT CTTTGGACTG
  CCTCGTGCTT CCTATGGGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	C3H/HeJ	NZW/LacJ	PWD/PhJ
ss38482157	NES09760617	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	C3H/HeJ	NZW/LacJ	PWD/PhJ
rs29288764					SNP	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38482157	NES09760617	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:141173749 () rs orientation: forward

Symbol	Name	Function Class
Acsl4	acyl-CoA synthetase long-chain family member 4	218 bp upstream
Cpgi22977	CpG island 22977	within coordinates
Gm61820	predicted gene, 61820	within coordinates
Rr8330	regulatory region 8330	within coordinates
Tssr162237	transcription start site region 162237	22 bp downstream
Tssr164293	transcription start site region 164293	408 bp upstream
Tssr164294	transcription start site region 164294	390 bp upstream
Tssr164295	transcription start site region 164295	325 bp upstream
Tssr164296	transcription start site region 164296	307 bp upstream
Tssr164297	transcription start site region 164297	233 bp upstream
Tssr164298	transcription start site region 164298	172 bp upstream
Tssr164299	transcription start site region 164299	139 bp upstream