rs29288765 SNP Detail

Summary

• ID
  rs29288765
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:141173322 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCACC GAAGGTGCTG CCTCGCTCGC
  Y
  ACGAGTCTGC CACTGGGTCC CGGCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	NZW/LacJ	PWD/PhJ
ss38482158	NES09760616	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	NZW/LacJ	PWD/PhJ
rs29288765					SNP	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38482158	NES09760616	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:141173322 () rs orientation: forward

Symbol	Name	Function Class
Acsl4	acyl-CoA synthetase long-chain family member 4	within coordinates
Cpgi22977	CpG island 22977	within coordinates
Gm61820	predicted gene, 61820	368 bp upstream
Rr8330	regulatory region 8330	within coordinates
Tssr162237	transcription start site region 162237	392 bp upstream
Tssr164293	transcription start site region 164293	8 bp downstream
Tssr164294	transcription start site region 164294	34 bp downstream
Tssr164295	transcription start site region 164295	68 bp downstream
Tssr164296	transcription start site region 164296	108 bp downstream
Tssr164297	transcription start site region 164297	165 bp downstream
Tssr164298	transcription start site region 164298	248 bp downstream
Tssr164299	transcription start site region 164299	277 bp downstream