rs29288767 SNP Detail

Summary

• ID
  rs29288767
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:141171964 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTGGAGTT GGAGCATCTC
  CAGAAGTCTG GATTCAGAAC AAGATTTTGT TCTTCCTCCA CCCATCACAT CTCTACCCAA
  CACAGTAAAA CTCTTTATAT CTGATTGATG CCAAGGCCCT TTATCCCAAT TTGCACATAT
  ATTGACAATA TAATACTGGT TGCTCCATGG AAATGGCAGA GATCATAAAT TTGAACAGGA
  R
  TCTACCATGT TTCACACTTT TGCACACTCC GCTGAAAAGA TGAGCTATGT TTGCAATTTA
  AGGAAAGAGG CCTCACATTT CAAATTTTGC TTGACCTGCT CAGTAGCAGC ACTGTAATTG
  ATCTCCACTT GGTGGTTTAT ACATTAAGAA TATTTGGAAG CCTTGCTTAC TGCAAGTACA
  AAAAGAAAAA AAAACAAAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	NZW/LacJ	PWD/PhJ
ss38482161	NES09760613	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	NZW/LacJ	PWD/PhJ
rs29288767					SNP	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38482161	NES09760613	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:141171964 () rs orientation: forward

Symbol	Name	Function Class
Acsl4	acyl-CoA synthetase long-chain family member 4	within coordinates
Cpgi22977	CpG island 22977	1186 bp proximal
Gm61820	predicted gene, 61820	1726 bp upstream
Rr3120	regulatory region 3120	964 bp distal
Rr8330	regulatory region 8330	within coordinates
Tssr162237	transcription start site region 162237	1750 bp upstream
Tssr164293	transcription start site region 164293	1366 bp downstream
Tssr164294	transcription start site region 164294	1392 bp downstream
Tssr164295	transcription start site region 164295	1426 bp downstream
Tssr164296	transcription start site region 164296	1466 bp downstream
Tssr164297	transcription start site region 164297	1523 bp downstream
Tssr164298	transcription start site region 164298	1606 bp downstream
Tssr164299	transcription start site region 164299	1635 bp downstream