rs29288971 SNP Detail

Summary

• ID
  rs29288971
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:140509071 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGGAGTTG GGGGATGAGG
  GGGCGTGGTT GGGGTCCCAG AGAGGGGCTT CTCAATCTGC TTGTCTCTGG ATCAGGCTGT
  AAACAACCCT CGGAAAATAG CTGTTAATGG TGGTGATAAA TTCCTGCAAA TCCCAGAGCC
  GCGGTGACCC CTCTGCCAGG AGCCCTTTCT CTTTTTCCCT ACAGCTCACA TTTTCCCTTC
  Y
  GATCGCAGTT TGCTCTAGTT CCACCCGCCT CTCACTTTGA GCTGTGCTTC TTAGCAGAAA
  ATGTCAGTTA TCTCTGGAAA CGCGGCAAGG ACCTGGGTCC TCAGACCTGC TACACACCAG
  GCTGCACACC AGGCTGCACA CGCCTCCTCG CCCTCTCCAC CCCTGACAAA AGCCAGGGAC
  TCCAAAGACT CGGGAATTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	FVB/NJ	NZW/LacJ	PWD/PhJ
ss38483723	NES09764964	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	FVB/NJ	NZW/LacJ	PWD/PhJ
rs29288971					SNP	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38483723	NES09764964	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:140509071 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22975	CpG island 22975	934 bp distal
Gm15295	predicted gene 15295	within coordinates
Irs4	insulin receptor substrate 4	858 bp upstream
Rr3101	regulatory region 3101	1871 bp distal
Rr8326	regulatory region 8326	within coordinates
Tssr164271	transcription start site region 164271	880 bp upstream