rs29288972 SNP Detail

Summary

• ID
  rs29288972
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:140507676 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTACTACCT GCCACACATC
  TTTGTAGAAG GGTGGCTCCG CCGCCGCTGC GGCCGCCAGG GCTGCCGGCT CTCCGTCCGG
  CAGTGCGCCT AGCGTGCCGC AGCGGCGGCG CTTGCTCTCG AGGATGAGGC GGCTGAGGAG
  CAAGTACCAG CTTTCTTGTT CCGACTCGTT CTCGGCCACC ATCGCGAAGT ATTCGTCCTG
  R
  GTAAAAAGGG CAATGAGGTG TCGGTACCTG GCATCGGCGC GCTGGCTCAC GGAGAAGCAT
  TGGTACAGGA TGATCACGCG CCGTGGTGGG ATGAGCGCGG GGACCGCAGC ACCGGAGGCG
  GCCGCCTCTG CTGCAGCCGC CGCGGCGCGG ACACTGTGCC GGAACTTCCT GGCATTTCGG
  TAGTATTCGA GTCGAGCTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	NZW/LacJ	PWD/PhJ
ss38483724	NES09764963	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	NZW/LacJ	PWD/PhJ
rs29288972					SNP	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38483724	NES09764963	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:140507676 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22975	CpG island 22975	within coordinates
Gm15295	predicted gene 15295	within coordinates
Irs4	insulin receptor substrate 4	within coordinates
Rr3101	regulatory region 3101	476 bp distal
Rr8325	regulatory region 8325	1875 bp distal
Rr8326	regulatory region 8326	within coordinates
Tssr164271	transcription start site region 164271	501 bp downstream