rs29288973 SNP Detail

Summary

• ID
  rs29288973
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:140507436 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGTCG GTAAGACACA GCCGGAACAC
  R
  CCGCTCAGCT CTTTTCTGTG CCCCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
ss38483725	NES09764962	PERLEGEN	MM_PANEL2	f	SNP			A	A	G			G		G	G
ss46503173	mCV23421642	ABI	CRAMUS_MOUSE	f	SNP	G	A				G	G
ss134477630	ENSMUSSNP3804896	ENSEMBL	ENSEMBL_Sanger	f	SNP		A					G
ss325981673	CHEV_X_138158983	CHEVERUD	SCREENING_POP	f	SNP									A			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
rs29288973					SNP	G	A	A	A	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38483725	NES09764962	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:140507436 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22975	CpG island 22975	within coordinates
Gm15295	predicted gene 15295	159 bp upstream
Irs4	insulin receptor substrate 4	within coordinates
Rr3101	regulatory region 3101	236 bp distal
Rr8325	regulatory region 8325	1635 bp distal
Rr8326	regulatory region 8326	within coordinates
Tssr164271	transcription start site region 164271	741 bp downstream