rs29289374 SNP Detail

Summary

• ID
  rs29289374
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:140505806 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTAGGTTCC TTAGCCTTGT
  TCATTGGGGG CACATCATCT GAAGGCTTTG CAGATGACCC TTTATCTTCG GGTTTTGAGA
  ATGACGCCTC AGTTGAAGGC TTTGAAGACA CATTTTTGGT GCCCTGGCTA AAGGAGGCTT
  CTTTGTGTAG ACCGCTCCCC AGGAATTTTC CAGGTAACAT AGGAACATAC TCACTGTGGT
  Y
  ACTCTGTCCC AAAGGTGAAC TCTGAAAAGG ACTTGGCAGA GAGAAATACG AGCTCCAGCT
  TTTGGAGGAA GAGCCTCCCT GCGCATTGGG AGGATTTTTA GGAATCGCAC CTGCTCCGGG
  AGCCATAAAC ATGTAATCAC TGTCACTGTC ATTGTCCTTT GAGTCATCCC CTTTATTGGT
  GTCCGGTGCT TTCGGAGCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	NZW/LacJ	PWD/PhJ
ss38483727	NES09764960	PERLEGEN	MM_PANEL2	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	NZW/LacJ	PWD/PhJ
rs29289374					SNP	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38483727	NES09764960	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:140505806 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22974	CpG island 22974	719 bp distal
Cpgi22975	CpG island 22975	1239 bp proximal
Gm15295	predicted gene 15295	1789 bp upstream
Irs4	insulin receptor substrate 4	within coordinates
Rr3101	regulatory region 3101	1195 bp proximal
Rr8325	regulatory region 8325	5 bp distal
Rr8326	regulatory region 8326	394 bp proximal