rs29289375 SNP Detail

Summary

• ID
  rs29289375
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:140505534 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCTTAAAA GATCTGAGAG
  GCGGATTGTT GGATTTGGGA AGGGCACCCC GAATTCAACA TTCAGGTAGC CAGAAAAAGC
  TGTGGGTGCG GGGTCAGTAA CTACGCCCCG CATGTCTGGC AGTCCTTGAG CAGAGGAAGG
  TAGCACAAGG CGCTCTCTCT TAATAAAGTC AATGTTGATA TAGTCACGGG AGCCAGCAGC
  Y
  TCTCTCCGCT CCTGTGTGGG GTTTAGCGGT TTGGGCTTTA CTTGAGTTCC TTTTGCAATA
  AAAGAAAGGT GGTTAGGTTC CTTAGCCTTG TTCATTGGGG GCACATCATC TGAAGGCTTT
  GCAGATGACC CTTTATCTTC GGGTTTTGAG AATGACGCCT CAGTTGAAGG CTTTGAAGAC
  ACATTTTTGG TGCCCTGGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	PWD/PhJ
ss38483728	NES09764959	PERLEGEN	MM_PANEL2	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	PWD/PhJ
rs29289375					SNP	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38483728	NES09764959	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:140505534 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22974	CpG island 22974	447 bp distal
Cpgi22975	CpG island 22975	1511 bp proximal
Irs4	insulin receptor substrate 4	within coordinates
Rr3101	regulatory region 3101	1467 bp proximal
Rr8325	regulatory region 8325	within coordinates
Rr8326	regulatory region 8326	666 bp proximal
Rr9264	regulatory region 9264	1734 bp distal