rs29290200 SNP Detail

Summary

• ID
  rs29290200
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:141089650 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGGAAGAGA ATTCCTTCCA
  AGTTCTAGCC ACCAGCCCTG CAGGCCTGGC TTTGGCCCAG ATACAGCAGC CGCCTGCCTC
  CCCTAAGACA GAACCTGCCC TGGAGCATGC CCAAGCAAGA TTTCAGATGT CTTCCATCAG
  CACTAGCTGG ATTATGGCAG CTGAGACCCC TTGTTCACAT CCTACCCCTG TTAGTCAAGG
  Y
  CTATTTCCTT TCTAGTCCTC ACACATTTTT CTCACATTTT CCCACCTGTG GTCTGAAGAG
  AGTGTCTTAG TTAGAAAATA CCCAAGGCAA ATTTGGTGCC AGAGTGATTG ATCACGTAGG
  CCAACACAAT GGAAGACTCC CAGGTTGTTC AAAATGCTCC CTAAATAATA CACCAGACTG
  CAGGGAAGTA GTCTTGCTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38482393	NES09763566	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29290200					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38482393	NES09763566	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:141089650 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22976	CpG island 22976	590 bp distal
Kcne5	potassium voltage-gated channel subfamily E regulatory subunit 5	456 bp upstream
Rr3108	regulatory region 3108	1151 bp proximal
Rr8329	regulatory region 8329	249 bp distal
Tssr164278	transcription start site region 164278	467 bp upstream