rs29290201 SNP Detail

Summary

• ID
  rs29290201
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:141088977 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTAGGCCA GGATGAGGCC
  TCCGGCTAGG CAGGCATAGA AGATCATGAT GAGTAGGATG TAGAGATAAG CGTCGTTACC
  CTTGGCGCTG GTCGCCTCGC GGCCCACGAA AGGGTCAGGG ACGACCCCCA TGCCCATGCT
  CGGGCCGGTT CCGATGCCCA GGCCGCTGGC GTTGCCACGA TGGTGCAGCT CCAGCAGCAA
  R
  CGGTTCAAGA GGGTTTGCAG CCGTTGGCTC TCGCTGCAGT TCATAGCTGT TGGAGAGTGG
  CACGGAGGCT CCAGGACGCA GTTGACCTTT CCCCCTGGAC AAGGGGAAGC AAGCGAGCAA
  GGGGAGCAAG CAGAGCAGGC AGGGTGCAGA GACTTCGACA GCGAGGTGGC ACCCAGCTCC
  CCGGCAGGCG CTCAGTGACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38482394	NES09763626	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29290201					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38482394	NES09763626	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:141088977 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22976	CpG island 22976	within coordinates
Kcne5	potassium voltage-gated channel subfamily E regulatory subunit 5	within coordinates
Rr3108	regulatory region 3108	1824 bp proximal
Rr8329	regulatory region 8329	within coordinates
Tssr164278	transcription start site region 164278	189 bp downstream