rs29290654 SNP Detail

Summary

• ID
  rs29290654
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:141087747 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTTCAGTA GCTGGGACTC
  TGCATATGCT CTTTCCTTCC CCCCACCCCA CCCCCACAGC TACCATATTC AGCCTATAGT
  CAATATAGAA ATCACCACCA CCCAATTTCC AAACATCATC TCCAAACAAA AAAATAGACA
  GTTCCCTGTC TATCCAGTAG TGGGTCTCAA GGCTGGGATC TTTGAGACAA GAGTCTTGAG
  Y
  TACTGATTAA CAAACTTTAT TACCTGCCTG TAAGATTCCC CAAGGTTACA GAGCTAGGGA
  TGACTGGCCC TGAATGAAGC ATACATACAT TGCAGTAATA ACTGAACCAA TATAAGAGAT
  GCATTTGGGA TTATTAAGGC TAAGCAACTA GTAATGATTA TCCAAGCCAG ATGTCCAAAG
  CACTAATACT CAGACCATTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38482397	NES09763621	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29290654					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38482397	NES09763621	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:141087747 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22976	CpG island 22976	837 bp proximal
Kcne5	potassium voltage-gated channel subfamily E regulatory subunit 5	2 bp downstream
Rr6790	regulatory region 6790	1103 bp distal
Rr8329	regulatory region 8329	453 bp proximal
Tssr164278	transcription start site region 164278	1419 bp downstream