rs29292085 SNP Detail

Summary

• ID
  rs29292085
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:151925127 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGATTTTTT TTTTTTGATG
  AATGTCTGAA GTTGCTGTCA ACAAGGATGC CTAAAAAAAT GCCAGAAATT TCTACATAAT
  TAGGAGGGGA AAAGTAGAAG CTTAAGGAAC TGTGAAAAGA GAAAGGGGGC GAACTGCCAT
  TTGCTTTAAT GGTTCTGCAA TGCACATGCG TTGAAGGATC AGCCTTTACC TTCAGAAATA
  R
  ATACAGTTAT TGCTTAATTA ATGTTTAGTT AATCTAGTTA ATTGTTTAGT TAATTTGTTT
  TGCAAAGGGC AAGGAAAATG TTCATATAAA TTTTAGACTA AATAAACAAT TAAATTTTCT
  TAGGTAAACC TGGATATCTA AATTGTTGAA TTGAGCCAAT GCATATCCAG TATGTTTTCA
  CTAAAGCTTC TTATATTTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38486777	NES09734800	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	A	G	G	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29292085					SNP	G	G	G	G	G	A	G	G	G	A	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38486777	NES09734800	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:151925127 () rs orientation: forward

Symbol	Name	Function Class
Cpgi23008	CpG island 23008	1805 bp distal
Rr3330	regulatory region 3330	674 bp proximal
Rr8384	regulatory region 8384	527 bp distal
Rr9381	regulatory region 9381	127 bp distal
Rragb	Ras-related GTP binding B	within coordinates