rs29292088 SNP Detail

Summary

• ID
  rs29292088
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:151924999 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTTTACAT GAATAAACTC
  CCTGTACACC ACAAACATAA TTATCCTCAC CATGTAAGGT TAAAAAAGCT CCCATATTTT
  TAGCCTGACT TTATCTAAAA TTTAATTCTG GGCCTCAAGT TTGCTAGGAG GATTTTTTTT
  TTTTGATGAA TGTCTGAAGT TGCTGTCAAC AAGGATGCCT AAAAAAATGC CAGAAATTTC
  W
  ACATAATTAG GAGGGGAAAA GTAGAAGCTT AAGGAACTGT GAAAAGAGAA AGGGGGCGAA
  CTGCCATTTG CTTTAATGGT TCTGCAATGC ACATGCGTTG AAGGATCAGC CTTTACCTTC
  AGAAATAGAT ACAGTTATTG CTTAATTAAT GTTTAGTTAA TCTAGTTAAT TGTTTAGTTA
  ATTTGTTTTG CAAAGGGCAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss38486780	NES09734797	PERLEGEN	MM_PANEL2	f	SNP	A	T	T	T	A	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs29292088					SNP	A	T	T	T	A	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38486780	NES09734797	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:151924999 () rs orientation: forward

Symbol	Name	Function Class
Cpgi23008	CpG island 23008	1677 bp distal
Rr3330	regulatory region 3330	802 bp proximal
Rr8384	regulatory region 8384	399 bp distal
Rr9381	regulatory region 9381	within coordinates
Rragb	Ras-related GTP binding B	within coordinates
Tssr162397	transcription start site region 162397	1992 bp downstream
Tssr162398	transcription start site region 162398	1958 bp downstream
Tssr162399	transcription start site region 162399	1912 bp downstream
Tssr162400	transcription start site region 162400	1881 bp downstream