rs29292090 SNP Detail

Summary

• ID
  rs29292090
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:151924882 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATTGGGAC TTAGACAATA
  TCCCTAAGAC TGTAGCTCAG GAGCAATATT TCTTGACCTT TTTGGGATTT AGTATCACTT
  GTGAAGTACT GGTAATAACC TTCATAGGGA TATTAGGAAG TTTACATGAA TAAACTCCCT
  GTACACCACA AACATAATTA TCCTCACCAT GTAAGGTTAA AAAAGCTCCC ATATTTTTAG
  M
  CTGACTTTAT CTAAAATTTA ATTCTGGGCC TCAAGTTTGC TAGGAGGATT TTTTTTTTTT
  GATGAATGTC TGAAGTTGCT GTCAACAAGG ATGCCTAAAA AAATGCCAGA AATTTCTACA
  TAATTAGGAG GGGAAAAGTA GAAGCTTAAG GAACTGTGAA AAGAGAAAGG GGGCGAACTG
  CCATTTGCTT TAATGGTTCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38486782	NES09734795	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29292090					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38486782	NES09734795	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:151924882 () rs orientation: forward

Symbol	Name	Function Class
Cpgi23008	CpG island 23008	1560 bp distal
Rr3330	regulatory region 3330	919 bp proximal
Rr8384	regulatory region 8384	282 bp distal
Rr9381	regulatory region 9381	within coordinates
Rragb	Ras-related GTP binding B	within coordinates
Tssr162397	transcription start site region 162397	1875 bp downstream
Tssr162398	transcription start site region 162398	1841 bp downstream
Tssr162399	transcription start site region 162399	1795 bp downstream
Tssr162400	transcription start site region 162400	1764 bp downstream