rs29292091 SNP Detail

Summary

• ID
  rs29292091
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:151924512 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCGGCAATT AGATCACGAA
  AACACCATCT TTTGGTTTAT ATCTACAGGT GGGCAATGCC AAATGCAGCC ATGAAGAAAA
  AGGTAAGATG TGTTAGCTAC ATCAGTAACA TGAAGAAAAA GGTAAGAAGC TGCAGTTCAG
  GGAATCTGGC TTTTTCTGGA TTGTGGCAAG AATCTATGGG GTCTTTGAGA CACTCATCCC
  Y
  TTATTTACTG TCAGATTTAC TTTGTCTAAA ATTAATCTCA TGGAGTCAAG CCAGATACAA
  ATATTACACA GCCCTCTGTG TGTGCACTGA TTCTTTAACC CAAATCAAAT GTTACGTGCA
  ATTTTTTTTT CTAGCTGGAA TTGGATGTTC TTTGCTTTGC TTTGCACTTT TATTGGGACT
  TAGACAATAT CCCTAAGACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38486783	NES09734863	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	C	C	C	C	C	T	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29292091					SNP	T	C	T	C	C	C	C	C	T	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38486783	NES09734863	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:151924512 () rs orientation: forward

Symbol	Name	Function Class
Cpgi23008	CpG island 23008	1190 bp distal
Rragb	Ras-related GTP binding B	within coordinates
Tssr162397	transcription start site region 162397	1505 bp downstream
Tssr162398	transcription start site region 162398	1471 bp downstream
Tssr162399	transcription start site region 162399	1425 bp downstream
Tssr162400	transcription start site region 162400	1394 bp downstream