rs29292327 SNP Detail

Summary

• ID
  rs29292327
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:151922519 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGTTCCAA GCCTAAGAAG
  CTCTTAGGTC ATTGAGGTTG GAACTTGCTG CGTTGAGATT TGAGAGCTGG TTGACAAATC
  ACTTCTTCTC CACATAAAAC TCTGTATGTA GCAAGTATCT CATGATGATC ATCAGAAACT
  TTAAAATTAT GTTTGCAACT TTTAAAAGTT AAGTGGCGGA CGTGTTAAAC CCTCCGTGTG
  R
  TTCTGGTCCT GGCAATAACA ACTTATTGAG AGTTTTCTAT GGGAAAGACA GTTTAAAACA
  CTTTAGATGG ATTGCTTTTT TAATTACTTG AACTGTCATA AGGATTAACG GGAAGAAAAG
  TTACCAAAAT GCAAAAATGC ACAGGGCCCT AATCATAGGG AGTAGTGAAA ACGGCTAGCT
  GGCAGGTGCT GAAATTGCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38486789	NES09734869	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29292327					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38486789	NES09734869	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:151922519 () rs orientation: forward

Symbol	Name	Function Class
Cpgi23008	CpG island 23008	302 bp proximal
Rr8384	regulatory region 8384	within coordinates
Rragb	Ras-related GTP binding B	458 bp upstream
Tssr162397	transcription start site region 162397	418 bp upstream
Tssr162398	transcription start site region 162398	489 bp upstream
Tssr162399	transcription start site region 162399	551 bp upstream
Tssr162400	transcription start site region 162400	588 bp upstream