rs29292328 SNP Detail

Summary

• ID
  rs29292328
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:151922495 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTAACCTTG GTGTCACATT
  TAAAAGAGTT CCAAGCCTAA GAAGCTCTTA GGTCATTGAG GTTGGAACTT GCTGCGTTGA
  GATTTGAGAG CTGGTTGACA AATCACTTCT TCTCCACATA AAACTCTGTA TGTAGCAAGT
  ATCTCATGAT GATCATCAGA AACTTTAAAA TTATGTTTGC AACTTTTAAA AGTTAAGTGG
  Y
  GGACGTGTTA AACCCTCCGT GTGGTTCTGG TCCTGGCAAT AACAACTTAT TGAGAGTTTT
  CTATGGGAAA GACAGTTTAA AACACTTTAG ATGGATTGCT TTTTTAATTA CTTGAACTGT
  CATAAGGATT AACGGGAAGA AAAGTTACCA AAATGCAAAA ATGCACAGGG CCCTAATCAT
  AGGGAGTAGT GAAAACGGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38486790	NES09734868	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29292328					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38486790	NES09734868	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:151922495 () rs orientation: forward

Symbol	Name	Function Class
Cpgi23008	CpG island 23008	326 bp proximal
Rr8384	regulatory region 8384	within coordinates
Rragb	Ras-related GTP binding B	482 bp upstream
Tssr162397	transcription start site region 162397	442 bp upstream
Tssr162398	transcription start site region 162398	513 bp upstream
Tssr162399	transcription start site region 162399	575 bp upstream
Tssr162400	transcription start site region 162400	612 bp upstream