rs29292329 SNP Detail

Summary

• ID
  rs29292329
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:151922283 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACTACAAA GGAATATTAT
  GAATTAAAAA GCATACAACA GAAAATAACT ACTGCAGGTT CAAAAGACTG TTGTACTCTA
  ATAGAGTATG GGTTGGGAAG ACCTCTGGAG GACATTACCT ATAAGCTGAG AAAGTTGAGG
  CCATTACAAA CTGTGAATGG CAAATTCAGT CTTTCAAGGG AGCATCAACC TATGCCACTC
  Y
  TTTTCCCAGC CTGTAACCTT GGTGTCACAT TTAAAAGAGT TCCAAGCCTA AGAAGCTCTT
  AGGTCATTGA GGTTGGAACT TGCTGCGTTG AGATTTGAGA GCTGGTTGAC AAATCACTTC
  TTCTCCACAT AAAACTCTGT ATGTAGCAAG TATCTCATGA TGATCATCAG AAACTTTAAA
  ATTATGTTTG CAACTTTTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38486791	NES09734867	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29292329					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38486791	NES09734867	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:151922283 () rs orientation: forward

Symbol	Name	Function Class
Cpgi23008	CpG island 23008	538 bp proximal
Rragb	Ras-related GTP binding B	694 bp upstream
Tssr162397	transcription start site region 162397	654 bp upstream
Tssr162398	transcription start site region 162398	725 bp upstream
Tssr162399	transcription start site region 162399	787 bp upstream
Tssr162400	transcription start site region 162400	824 bp upstream