rs29292330 SNP Detail

Summary

• ID
  rs29292330
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:151921123 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTATAAAT TTCTTGACTC
  CTTATCCTTG TTTCCTACTT AAACTTCAAA AGCCCTGGAA GAAGATTCAG AGGTCATACC
  TAGCCTGTCT TATAATCATC TCCACTAAGG TTGTTGATTA CATTTAGAGC AAAAAACACA
  CCCCCAAACC AATCCATGCA TGTGTGCCAT ACCATCTTAC TATTTCCAAC CTTAATTGTT
  Y
  TTTCAGTACC GAACAGAAAT CCTTGCGGCA TGCTTCTTTA TGCTGTTCTT TTGCTTATCT
  TTCAAATGGT TAACATCTCG GCCAATTTCC CAAAATGATC TTGCTTTTCC AACACTGATA
  ATAGAATACA ATAGCTGGGA TAGTTTCCCA TATACACCAC CTATCATCAA CTTCTAGAGA
  CTGCTTTGTG TCCATGCCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38486792	NES09734916	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29292330					SNP	C	C	T	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38486792	NES09734916	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:151921123 () rs orientation: forward

Symbol	Name	Function Class
Cpgi23008	CpG island 23008	1698 bp proximal
Rr8384	regulatory region 8384	1277 bp proximal
Rragb	Ras-related GTP binding B	1854 bp upstream
Tssr162397	transcription start site region 162397	1814 bp upstream
Tssr162398	transcription start site region 162398	1885 bp upstream
Tssr162399	transcription start site region 162399	1947 bp upstream
Tssr162400	transcription start site region 162400	1984 bp upstream