rs29293785 SNP Detail

Summary

• ID
  rs29293785
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:149375608 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTGGGAAA ACCTTGTTAT
  ATTTTTTTTA CTTTAAATTT ATACATAATT GTTTATAATT GTGTAGTGCT GTATGATACT
  TCAGTGCATG CATATAATGT GCAATGGTCA ATTGCTTTAT GTATCACCTC AAATAAGTAT
  TATTTCTCAT CTCTACCAGC TACTTTGAAG TATACAATTA TCTGTTGTGA ACCATAGTTT
  W
  CCAAATGTGC TCTAGAACAT CAGAAGTTAT TCCTCCTATT TACCAGAATC CAGCCTGTTT
  ATTGTTCTCC CTTTCTCCCT TTCCTTTGCC CCCTAGTCTA TACTCAGTTC CTCGCCAACC
  TCTTTTAGGT TTGTCCAGTA AGTGAGAGCA TGTAGTGTTT GATGTTTTAT GTCAGACTTA
  AGTTAACAGA AACCTAGAAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38491507	NES09739440	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29293785					SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38491507	NES09739440	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:149375608 () rs orientation: forward

Symbol	Name	Function Class
Pfkfb1	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1	within coordinates
Tssr162315	transcription start site region 162315	1328 bp upstream
Tssr162316	transcription start site region 162316	1713 bp upstream
Tssr162317	transcription start site region 162317	1726 bp upstream
Tssr162318	transcription start site region 162318	1781 bp upstream
Tssr162319	transcription start site region 162319	1808 bp upstream