rs29294300 SNP Detail

Summary

• ID
  rs29294300
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:149899708 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAAAAAAC AAAACAAAAA
  GAAAACAAAA CAAAAACAAA ACCCTAAACT AAACTGCCCA CAACATGATT TCTGTTATCA
  AAAGAATAGT TAATGAATCC TGAGAGACCA AGTACAACAT AAATGTCCAC TAGAGCCTGG
  ATCTTCTTTG GGGAAATTAG GTTTGGAAGA TTTTTTTTTT TTTGAATGAA GAATCAAAAA
  Y
  ACCAGCAATA ACAGAAATCT GCTATAGAAA TGTCCTTAGG GGGAACCAAA TTCTTTTCCG
  CAAGAAGAGG AATTTCAGAA TTTGAAAGAG AATGCCTGGG GAAATCGTGG GGAAAGGGGA
  GAATGGGAGT TTATGACAGA CAAACCCCGC CTCAGTCTGA ACCCAGGGCC ACAGAGCAAG
  TACTGTCTTT GAGGAGTATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38490533	NES09751208	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29294300					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38490533	NES09751208	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:149899708 () rs orientation: forward

Symbol	Name	Function Class
Rr3245	regulatory region 3245	93 bp proximal
Rr9350	regulatory region 9350	71 bp proximal