rs29294303 SNP Detail

Summary

• ID
  rs29294303
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:149899003 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAGAAAGA GTGTAGGAGA
  AATGGGAGGA GCAATGCCCA GCATGGCATT TGTGTGTGTG TGTGTCTCTG TGTGTATGTT
  TTGAACGGAA ATCACCCCTT CCCTTTTCTT CCAGAATGGA GAATGAAAGG GAATACTGAA
  GAATGTGGTT TCCAGGTTGC TGTAGTTGGA TGAAGGTATA CTAGCTATTG TTCACTTCTG
  Y
  TTTATTCAAA GGATAATCTA CAGACCAGTA TCACCTGGGA GCTTTGTAGG CCCAAAGGCT
  CTCAAGCCCT ACTGACTTGG AACTAGGTTA TAATAAGACC CCAATGTGAT TTGTATGGGC
  ATTAGAATTT GGGAAATGCA CTACCTTAAT CTAAATTGAG CTGACTTGGG GCCTGTGTAC
  ATTTTTTAAT TTAATTTAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38490536	NES09751244	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29294303					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38490536	NES09751244	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:149899003 () rs orientation: forward

Symbol	Name	Function Class
Rr3245	regulatory region 3245	798 bp proximal
Rr9350	regulatory region 9350	776 bp proximal