rs29294839 SNP Detail

Summary

• ID
  rs29294839
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:149336641 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAAGTATC TTACATTATC
  AATTTTATTA GAAAAAATTC AAAGATCGTT TTGTTTTCAA TAAAACAATC TTTATAAGGG
  TACAGAGTTC AAGGACAATC TGGGCCGAGC ACCCAAAACG ATTACACTTA AGCAATGACC
  ATATTATTGG CATCTTTCAC AGGCCACTTT GAAGGAAAAA AGTATTGAAA TTGAATGATG
  Y
  TCAGAAAGGA AAACTAATAG GTACTCCCAA GTGCAGGGGC TAGGGTGCAT AGTCTGGTTA
  CCTTACCTAA AGGGCAATGA AGTGCAAGCC ACCTTGCAGA AGGTTTCTGG ACATTCTAGG
  CATTGCTATA GGGACACAAG TGGATGCTTA CTTTACAGAC ACATACTCCA GGAGTCATGT
  ATACTTTCTA AATTTGAATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38491721	NES09740188	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29294839					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38491721	NES09740188	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:149336641 () rs orientation: forward

Symbol	Name	Function Class
Alas2	aminolevulinic acid synthase 2, erythroid	within coordinates
Apex2	apurinic/apyrimidinic endonuclease 2	within coordinates
Tssr5699	transcription start site region 5699	1363 bp downstream
Tssr162307	transcription start site region 162307	1465 bp downstream
Tssr162308	transcription start site region 162308	360 bp upstream