rs29295288 SNP Detail

Summary

• ID
  rs29295288
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:149335261 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGCAAAGA ATTAAACAGG
  CATGACTTTT GACTTTTGGC CAGGCTTTCA TGATGGAATC TCATCTCTTG CACAATTTCT
  ACAGGACTTT GGGCTCAGGA TGGTGGCAGC AGCTATGTTG CTACGGTCCT GTCCAGTGCT
  CTCTCAGGGC CCCACAGGCC TCCTGGGCAA AGTGGCTAAA ACCTACCAGT TCCTATTTAG
  Y
  ATTGGACGCT GCCCCATCCT GGCCACTCAA GGACCAACCT GTTCTCAAAT CCATCTTAAG
  GCAACCAAGG CTGGAGGAGG TAAGAAGAGG TTATTGGCAA ATGGGAATTT CTGAGTCATA
  AAGATAAAGT TCTAAATTCG TCATTTCCTA ATAGCTTGGA GAGTTGATGT GAAAATGTCA
  AGGCAGAATG GACTGACCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38491730	NES09740173	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29295288					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38491730	NES09740173	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:149335261 () rs orientation: forward

Symbol	Name	Function Class
Alas2	aminolevulinic acid synthase 2, erythroid	within coordinates
Apex2	apurinic/apyrimidinic endonuclease 2	within coordinates
Rr694328	regulatory region 694328	1502 bp distal
Tssr5699	transcription start site region 5699	2 bp upstream
Tssr162305	transcription start site region 162305	1311 bp downstream
Tssr162306	transcription start site region 162306	1283 bp downstream
Tssr162307	transcription start site region 162307	85 bp downstream
Tssr162308	transcription start site region 162308	1740 bp upstream