rs29295669 SNP Detail

Summary

• ID
  rs29295669
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:150360063 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATATAAATA TAAAGCTAAT
  TATAGATTTC TACGTGAAAA ATGTAATAGT TTGTCTTTTT TCCTTATTAT TCTCTCTCAT
  TCTACCTCTT CTCTAGATCC CTTCTTTCTA GATATACATC TATGTATTCA AGCAAGTATG
  TGCATTTATT ACATATATTG TGCGTGTTAT TCCAAACCTT TGACAGGACA GTGCTTATTT
  Y
  TAGAAAGTAG GATAAGGGAA AAGAGAACAA ACATTTACTT ACATAGGATT TTCTCAGTGT
  TGCATCAAGG TGTCACTCAC TCTGTAGTTC ACACTGGCCT GCTATTTTCT ATGTAGCTCA
  GGCTGACCTA GAACTTGAGG TAATTCCCCT GACTTAGCCT CCATGATGTA GAGGTTACAA
  ATGAGTACCA ACATAACCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38489762	NES09750856	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29295669					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38489762	NES09750856	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:150360063 () rs orientation: forward

Symbol	Name	Function Class
Phf8	PHD finger protein 8	within coordinates
Rr3265	regulatory region 3265	1463 bp distal
Rr10519	regulatory region 10519	1585 bp distal
Rr395772	regulatory region 395772	644 bp upstream