rs29295672 SNP Detail

Summary

• ID
  rs29295672
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:150359498 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGAGAACT GATTTTCATT
  TTGCTAGCAA GTATCCCTTG GGACCCCTTG AATCTGTGCA AGTATTGTGG ATGCAACCCC
  AGTCTCTTTG AATTCATATG TGCATCAGTT CTATGTTATC TGGAAGGAAC TATTTTCTTG
  GAATCATCCA TTATCTTAGG CTCTTACATT CTGCCTTCTT TCCTGCATAG ATCCCTGAGG
  Y
  TTGAGAGTAG GGGGTCTGAT GAAGATACTC CATTTAGAAA TGAGTGTTCC AGAGTTTCTT
  ACTGTCTTTA TTTGGTCAGT TGTGGGTCTC TGTGTTAATT CTTGTCTACT GAAAGCTTAG
  CTTCTCTCAT GTGGGTTTAA TAAGGCACTG ATCTGTGGGT ATAGCAGTAT GTCATTAGTC
  ATGTTTTGCT ATGTTCCTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38489766	NES09750852	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29295672					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38489766	NES09750852	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:150359498 () rs orientation: forward

Symbol	Name	Function Class
Phf8	PHD finger protein 8	within coordinates
Rr3265	regulatory region 3265	898 bp distal
Rr10519	regulatory region 10519	1020 bp distal
Rr395772	regulatory region 395772	1209 bp upstream