rs29296295 SNP Detail

Summary

• ID
  rs29296295
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:150359142 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAGCAGATT TCATTATGAC
  ATTTCCCTTT AAAATATTTT TTATTTAAAT TTTTTGATAC AATATATTTT GATCATGTTT
  TTCCCTCCCC AAACTCCTCC CAGATCACCT TCCTACCCAT TCAAAATCAT GTATGTGTAC
  ATGCATACTC TCTCTTGCTT GCTTACATTT TTATTTCTAA AAATCAAAAG CTGAAAATCC
  Y
  GAGAAACAAA ACCAAGGCAA AATAACAACA ACAATAACAG TAGCAGCAGC AGCAGGATAA
  AACAAAACAG CTTACTAAAA AATAACATGG AGTTTGTTTT TGACCAACTA ATACCTTGCA
  TGAGGCCTAC CTTGGAGTAT GGTTTACATT CCATTGGAGA GAACTGATTT TCATTTTGCT
  AGCAAGTATC CCTTGGGACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38489770	NES09750841	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29296295					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38489770	NES09750841	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:150359142 () rs orientation: forward

Symbol	Name	Function Class
Phf8	PHD finger protein 8	within coordinates
Rr3265	regulatory region 3265	542 bp distal
Rr10519	regulatory region 10519	664 bp distal
Rr395772	regulatory region 395772	1565 bp upstream