rs29296389 SNP Detail

Summary

• ID
  rs29296389
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:149379025 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTCTGCAT ACGTAGGTCT
  CCCAGAGTGA AAACCCCTAT ATTCTTGAGA AATCTGCCTT TCAAGTTGGA GAGGCAATAT
  ACATTAATGA CTTTGCAGTC ATGTAGAAGA TACAGAAGAC AGCTGGCCAT GACCAATACT
  CAGGAGGCAG ATTCGGGGGA ACTTCCTGCA AGTTTGAGAA CTAGTCTTAG CCTCACAGTA
  S
  ATTCTCAGCC ACGCAGGCCT ATATAGCAGG CTCCATCTCA AAAGCAATCC AAGCTTGGTC
  TCTGTAACTC CTTGCATGGG TGTTTTGTTC CCAATTCTAA GAAGGGGCAA GGTGTCCACA
  CTTTGGTCTT CGTTCTTCTT GAGTTTCATG TGTTTTGCAA ATTGTATCTT GTATCTCGGG
  TATTCTAAGT TTCTGGGCTA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38491481	NES09739479	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29296389					SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38491481	NES09739479	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:149379025 () rs orientation: forward

Symbol	Name	Function Class
Pfkfb1	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1	within coordinates
Rr694332	regulatory region 694332	333 bp distal
Tssr162316	transcription start site region 162316	1693 bp downstream
Tssr162317	transcription start site region 162317	1671 bp downstream
Tssr162318	transcription start site region 162318	1616 bp downstream
Tssr162319	transcription start site region 162319	1583 bp downstream
Tssr164369	transcription start site region 164369	1248 bp upstream