rs29296390 SNP Detail

Summary

• ID
  rs29296390
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:149378979 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTAAATAC TCCTCTAGAG
  AGAAAGGAAT CTGGATGAGA GAATAAGGTT CTGCATACGT AGGTCTCCCA GAGTGAAAAC
  CCCTATATTC TTGAGAAATC TGCCTTTCAA GTTGGAGAGG CAATATACAT TAATGACTTT
  GCAGTCATGT AGAAGATACA GAAGACAGCT GGCCATGACC AATACTCAGG AGGCAGATTC
  S
  GGGGAACTTC CTGCAAGTTT GAGAACTAGT CTTAGCCTCA CAGTAGATTC TCAGCCACGC
  AGGCCTATAT AGCAGGCTCC ATCTCAAAAG CAATCCAAGC TTGGTCTCTG TAACTCCTTG
  CATGGGTGTT TTGTTCCCAA TTCTAAGAAG GGGCAAGGTG TCCACACTTT GGTCTTCGTT
  CTTCTTGAGT TTCATGTGTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38491482	NES09739478	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29296390					SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38491482	NES09739478	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:149378979 () rs orientation: forward

Symbol	Name	Function Class
Pfkfb1	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1	within coordinates
Rr694332	regulatory region 694332	287 bp distal
Tssr162316	transcription start site region 162316	1647 bp downstream
Tssr162317	transcription start site region 162317	1625 bp downstream
Tssr162318	transcription start site region 162318	1570 bp downstream
Tssr162319	transcription start site region 162319	1537 bp downstream
Tssr164369	transcription start site region 164369	1202 bp upstream