rs29296392 SNP Detail

Summary

• ID
  rs29296392
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:149378810 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATACT CCTCTAGAGA GAAAGGAATC
  Y
  GGATGAGAGA ATAAGGTTCT GCATA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38491484	NES09739476	PERLEGEN	MM_PANEL2	f	SNP	T			T	T	T	T	T	C	T		T	C		T
ss134502025	ENSMUSSNP2939078	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T					T
ss325985192	CHEV_X_147030357	CHEVERUD	SCREENING_POP	f	SNP											C			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29296392					SNP	T	C	T	T	T	T	T	T	C	T	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38491484	NES09739476	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:149378810 () rs orientation: forward

Symbol	Name	Function Class
Pfkfb1	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1	within coordinates
Rr694332	regulatory region 694332	118 bp distal
Tssr162315	transcription start site region 162315	1869 bp downstream
Tssr162316	transcription start site region 162316	1478 bp downstream
Tssr162317	transcription start site region 162317	1456 bp downstream
Tssr162318	transcription start site region 162318	1401 bp downstream
Tssr162319	transcription start site region 162319	1368 bp downstream
Tssr164369	transcription start site region 164369	1033 bp upstream