rs29296625 SNP Detail

Summary

• ID
  rs29296625
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:149442144 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTGTAGCA TACACATTCT
  TCTCAAATCT ACATGCAGTA CTCTCCAGCA CACATCCTGA GTAAGACCAC AAAACAAGTC
  TTAACAAACC TAAGGAGAAT ATTCGTCAGA ACCCATAGAA CTGTATGTCA CTAAATGGGA
  ACCTTAATAT ATACAAAAAT AATTAACCAC AGCATACAAA TAATCTTTGA TGTAATGAAA
  Y
  CTGTGACAAG TAGCTCTAAC TTTATTATAT AATTATCCTG CAACTATACA TTTTATGATG
  AAGAATGGCA AAAGAACAGA ATATTGACAG CACCTAAGCA ATGTTGTGAA GGGTGAAAAG
  GAGCAGTTTA CCTTAATATA TTTGGATGAT TGATTGAATG AAAACTAAAA GTAAAATCAA
  AGGAAACCCT ATAAATATAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38491277	NES09737622	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29296625					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38491277	NES09737622	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:149442144 () rs orientation: forward

Symbol	Name	Function Class
Rr694336	regulatory region 694336	1125 bp distal
Tro	trophinin	1565 bp upstream
Tssr164373	transcription start site region 164373	1771 bp upstream
Tssr164374	transcription start site region 164374	1741 bp upstream