rs29296628 SNP Detail

Summary

• ID
  rs29296628
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:149440604 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGTT CCCCAATACG TGTCCCTGTT
  Y
  CTATTTGATT TTTCAGTTTC TCCTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38491280	NES09737673	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	T	C	C		T	C	T	C		T	T	T	T		T
ss46517796	mCV23371997	ABI	CRAMUS_MOUSE	r	SNP		A					G
ss134502161	ENSMUSSNP5661705	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
ss325985243	CHEV_X_147092151	CHEVERUD	SCREENING_POP	f	SNP												T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29296628					SNP	C	T	C	T	C	C	C	T	C	T	C	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38491280	NES09737673	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:149440604 () rs orientation: forward

Symbol	Name	Function Class
Rr694335	regulatory region 694335	1190 bp distal
Rr694336	regulatory region 694336	within coordinates
Tro	trophinin	25 bp upstream
Tssr164372	transcription start site region 164372	475 bp upstream
Tssr164373	transcription start site region 164373	231 bp upstream
Tssr164374	transcription start site region 164374	201 bp upstream