rs29296630 SNP Detail

Summary

• ID
  rs29296630
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:149439442 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCCACACC CACCCACCCA
  CCCACACACA CACACACACA TATGCGCGTG CACACACACA CGCACGCGCG CATGATAACA
  GGTTTTCCAA ATGCAGCTGG TCCTCAAGGC CCTCAATACG CATGCGCTAT GGTGGACAGG
  ACCATTCTAA CCATCTCATG TCCACATATG TCCCCCGCTC TCAGAGCTAC AGAACATCTC
  R
  ATCCCACCGC CTCCTCCTCC TACATCATTT CTCAGCCCGT CCCCCCACCC CAGGCTCCAC
  AGGGCCTCTT CGCGCCACCC CCTCCTACCA CCATCCCACC CCACCCCCGC CCCCATTCCT
  GTGCGGCCGC GCCAGCCCGC GCCAACCATC AGCCACTCAC TCAGGCTGTG GTTCCGCAGT
  CCTCCGCACC TCCCACCCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38491282	NES09737710	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29296630					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38491282	NES09737710	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:149439442 () rs orientation: forward

Symbol	Name	Function Class
Rr694335	regulatory region 694335	28 bp distal
Rr694336	regulatory region 694336	943 bp proximal
Tro	trophinin	within coordinates
Tssr164370	transcription start site region 164370	1534 bp upstream
Tssr164371	transcription start site region 164371	850 bp upstream
Tssr164372	transcription start site region 164372	676 bp downstream
Tssr164373	transcription start site region 164373	920 bp downstream
Tssr164374	transcription start site region 164374	946 bp downstream