rs29296829 SNP Detail

Summary

• ID
  rs29296829
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  ChrX:150695015 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGAA CTCTCCAGCT GGCCTGTATT
  Y
  CCCAAGTCCT CTCCAAAGCT GTTGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38489283	NES09742570	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	T	C	C	C	C	T	T		C	T	C	C		T
ss134505390	ENSMUSSNP7054720	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
ss325986514	CHEV_X_148346562	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29296829					SNP	C	T	C	T	C	C	C	C	T	T	T	C	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38489283	NES09742570	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:150695015 () rs orientation: forward

Symbol	Name	Function Class
Huwe1	HECT, UBA and WWE domain containing 1	Intron
Mir98	microRNA 98	1195 bp upstream
Mirc49	microRNA cluster 49, including Mirlet7f-2 through Mir98	327 bp proximal
Mirlet7f-2	microRNA let7f-2	327 bp upstream
Rr694402	regulatory region 694402	1009 bp distal
Tssr162364	transcription start site region 162364	1845 bp downstream
Tssr162365	transcription start site region 162365	1820 bp upstream