rs29296831 SNP Detail

Summary

• ID
  rs29296831
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  ChrX:150694605 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTGGGATT GAATCAGTGG
  TAATGTGCTT GCTCTATATA AGCCAAACCC ACTTACTTAT ATGTAGGCAC ATACTGCTAC
  ACATGCAAAG AAATGGGGGG GTGCATTAAT ATTGAGGGTA TAGCTTAGTG ATAGGGCACT
  CTTCCAGTCT GTACAAGGTC CAGGTTTGAT TCCTAACATG CTAAAATTAG TGCAGACACA
  Y
  TGAGGTATTT GTTTATAATA ACAGGCTTGC TCTAACAAAT ACTTTTATTT ATATAAAACT
  TTGCCTTAAA ACCAGCAACA TTGTATATGA CTAAAAACTA AAATGGACAT TGGATTATAG
  CTCAGTGGCA TGTGCATGGT TTGATCCAAA GCAATACCCC AAAACAAAGC TAGAGTGGAA
  AAAATAATAA ACCCAAAGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38489285	NES09742568	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29296831					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38489285	NES09742568	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:150694605 () rs orientation: forward

Symbol	Name	Function Class
Huwe1	HECT, UBA and WWE domain containing 1	Intron
Mir98	microRNA 98	1605 bp upstream
Mirc49	microRNA cluster 49, including Mirlet7f-2 through Mir98	737 bp proximal
Mirlet7f-2	microRNA let7f-2	737 bp upstream
Rr694402	regulatory region 694402	599 bp distal
Tssr162363	transcription start site region 162363	1743 bp downstream
Tssr162364	transcription start site region 162364	1435 bp downstream