rs29297196 SNP Detail

Summary

• ID
  rs29297196
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:149376791 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCACCTCTCC TAAGATCCCA TTCCACCACC TTGGCTCGAA
  GAGCTTTAGC CCCGGTTTGA ATTAGATTGT GATGCCTTTA GTGCTGGCTC ATCTCAGCAT
  Y
  GGCGGCCATG GGAGCTGCGT TTACTTATCG GCTCTCTGCC AAGTAATGAC TGCCTTCGCT
  CTTATTCCCA AGGTGCCAGA TTTACTCTGA TTTATTTAAC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38491498	NES09739459	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29297196					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38491498	NES09739459	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:149376791 () rs orientation: forward

Symbol	Name	Function Class
Pfkfb1	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1	within coordinates
Rr694332	regulatory region 694332	1635 bp proximal
Tssr162315	transcription start site region 162315	145 bp upstream
Tssr162316	transcription start site region 162316	530 bp upstream
Tssr162317	transcription start site region 162317	543 bp upstream
Tssr162318	transcription start site region 162318	598 bp upstream
Tssr162319	transcription start site region 162319	625 bp upstream
Tssr164369	transcription start site region 164369	980 bp downstream