rs29297199 SNP Detail

Summary

• ID
  rs29297199
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:149376679 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAGTAAAA GGGCACTTGG
  ACATCTTCCA GGCAAGCCGT GCAGTTGCAT GAATTCTACA GATAAAAGTC TCAAAATAAC
  TGGGGGAATG GCAATACAAG TGGGGACAAG TAAAGGGGAG ACATCTGGAT GATATGTCTC
  TGGCCTATGG ATTTGTGCTA TTTAGATAGA CACCATTGCC TCTTGTTCTT CATATTCTCC
  K
  CGGTGTGGTT TCCACCTCTC CTAAGATCCC ATTCCACCAC CTTGGCTCGA AGAGCTTTAG
  CCCCGGTTTG AATTAGATTG TGATGCCTTT AGTGCTGGCT CATCTCAGCA TTGGCGGCCA
  TGGGAGCTGC GTTTACTTAT CGGCTCTCTG CCAAGTAATG ACTGCCTTCG CTCTTATTCC
  CAAGGTGCCA GATTTACTCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38491501	NES09739455	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	T		G	G	T	G
ss134502007	ENSMUSSNP192426	ENSEMBL	ENSEMBL_Sanger	f	SNP												T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29297199					SNP	G	G	G	G	G	G	G	G	G	G	T	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38491501	NES09739455	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:149376679 () rs orientation: forward

Symbol	Name	Function Class
Pfkfb1	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1	within coordinates
Rr694332	regulatory region 694332	1747 bp proximal
Tssr162315	transcription start site region 162315	257 bp upstream
Tssr162316	transcription start site region 162316	642 bp upstream
Tssr162317	transcription start site region 162317	655 bp upstream
Tssr162318	transcription start site region 162318	710 bp upstream
Tssr162319	transcription start site region 162319	737 bp upstream
Tssr164369	transcription start site region 164369	1092 bp downstream