rs29297201 SNP Detail

Summary

• ID
  rs29297201
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:149375944 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTAAGTGA GAGCATGTAG
  TGTTTGATGT TTTATGTCAG ACTTAAGTTA ACAGAAACCT AGAAATGAGT TTACCTTTCT
  AATTGATTCT CAGGAAGTCT TTACAGTGCA AATGTTAATC CTGTGTCACG ACAATGTGCT
  CGAACTTGCA GATGACTTGA GGGAAAAAGA TGAATCATTT CCTTCCCAAA GGAAGCGACA
  R
  TGTTGAATCA TGTGTATTCC ACATTCCCCA GGTTTCTCCA TGTGTATCAC ATTGGCTCTT
  CGCTAACACC AAGGGAATGG ACCCCACTAC CCTTCCCTAT ATACTAAATG AAAAAGCAGA
  ACAAAACAGA GCAACTGAGG CACTGAAAAG TTCAGTCTTC TGCCCGGTTT CTCATATCTA
  GCAATGGATG GAAGTAAGAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38491503	NES09739451	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29297201					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38491503	NES09739451	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:149375944 () rs orientation: forward

Symbol	Name	Function Class
Pfkfb1	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1	within coordinates
Tssr162315	transcription start site region 162315	992 bp upstream
Tssr162316	transcription start site region 162316	1377 bp upstream
Tssr162317	transcription start site region 162317	1390 bp upstream
Tssr162318	transcription start site region 162318	1445 bp upstream
Tssr162319	transcription start site region 162319	1472 bp upstream
Tssr164369	transcription start site region 164369	1827 bp downstream