rs29297224 SNP Detail

Summary

• ID
  rs29297224
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  ChrX:150693493 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAAT GTGAACCTTA TACAATAGTC
  Y
  TACTTTGTAA ACTCTTTCTG AGGCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	MSM/Ms	PWD/PhJ	SM/J
ss38489288	NES09742648	PERLEGEN	MM_PANEL2	f	SNP	C	T	C		C	C		C		C
ss46501051	mCV24692383	ABI	CRAMUS_MOUSE	r	SNP		A		G		G
ss134505381	ENSMUSSNP4920840	ENSEMBL	ENSEMBL_Sanger	f	SNP		T				C			C
ss325986513	CHEV_X_148345040	CHEVERUD	SCREENING_POP	f	SNP							T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	MSM/Ms	PWD/PhJ	SM/J
rs29297224					SNP	C	T	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38489288	NES09742648	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:150693493 () rs orientation: forward

Symbol	Name	Function Class
Huwe1	HECT, UBA and WWE domain containing 1	Intron
Mirc49	microRNA cluster 49, including Mirlet7f-2 through Mir98	1849 bp proximal
Mirlet7f-2	microRNA let7f-2	1849 bp upstream
Rr694402	regulatory region 694402	228 bp proximal
Tssr162362	transcription start site region 162362	935 bp downstream
Tssr162363	transcription start site region 162363	631 bp downstream
Tssr162364	transcription start site region 162364	323 bp downstream