rs29297225 SNP Detail

Summary

• ID
  rs29297225
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  ChrX:150693317 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TATTT ATTATGATTT TGCCCTGCTC
  R
  TAGTACTAAA CTACTAGAAA ATTCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38489289	NES09742647	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	G	A	A		A	A	G	G		A		G	A	A		G
ss46493177	mCV24692384	ABI	CRAMUS_MOUSE	r	SNP		C					T		T
ss134505378	ENSMUSSNP3145402	ENSEMBL	ENSEMBL_Sanger	f	SNP		G							A					A
ss325986512	CHEV_X_148344864	CHEVERUD	SCREENING_POP	f	SNP												G						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29297225					SNP	A	G	A	G	A	A	A	A	A	G	G	G	A	A	G	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38489289	NES09742647	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:150693317 () rs orientation: forward

Symbol	Name	Function Class
Huwe1	HECT, UBA and WWE domain containing 1	Intron
Rr694402	regulatory region 694402	404 bp proximal
Tssr162362	transcription start site region 162362	759 bp downstream
Tssr162363	transcription start site region 162363	455 bp downstream
Tssr162364	transcription start site region 162364	147 bp downstream