rs29297226 SNP Detail

Summary

• ID
  rs29297226
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  ChrX:150693291 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTAGTGGT TAAAGTGCCC
  ATTGTCAATC ACCTGGAATT CTTGAGAGAT GAGGAGCTAG AAGAGAGAAG GGAGAAACGC
  AGGAAACAAT TGGCTGAGGA AGAAACAAAA ATAATAGACA AAGGCAAAGA AGACAAGGAG
  AACAGAGATC AGAGTGCACA GGTGAGGTGA CTCCAAAAGA CTTAAGAGAT GCAGCATTTT
  S
  TATTTATTAT GATTTTGCCC TGCTCATAGT ACTAAACTAC TAGAAAATTC TAGAACATTA
  CGTTGAACAT GAAAGATTGT TCATTTCCAG ATTGACTATT TACTCATCTG GTTTTTAGGC
  AAAAAGAAAA AAAAGTCAAA CCCAGAGGTA AATTATTTCT CCACTACCTT ACTGGGGAAA
  TGTGAACCTT ATACAATAGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38489290	NES09742643	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	C		G	G	C	G
ss134505375	ENSMUSSNP848486	ENSEMBL	ENSEMBL_Sanger	f	SNP		G						G				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29297226					SNP	G	G	G	G	G	G	G	G	G	G	C	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38489290	NES09742643	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:150693291 () rs orientation: forward

Symbol	Name	Function Class
Huwe1	HECT, UBA and WWE domain containing 1	Intron
Rr694402	regulatory region 694402	430 bp proximal
Tssr162362	transcription start site region 162362	733 bp downstream
Tssr162363	transcription start site region 162363	429 bp downstream
Tssr162364	transcription start site region 162364	121 bp downstream