rs29297227 SNP Detail

Summary

• ID
  rs29297227
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  ChrX:150692724 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGATGACGA GCTGCTGGAT
  GACTTTTTTC ATGACCAGAG TACAGCCACT AGCCAAGCAG GCAAGTTTAT TCAGTAAGAG
  GGAGGATAGA GTTCTTTGAT TCTTCTTCAG TCCTAAGAAG AAGAGTAGTC TCTTTCTTGG
  AGAAACTACA TTTTATAGGA GCCAAAACCA CTTGGTGACT TAGCCAAGGA CAACAACTCT
  R
  TTGCCTCTGG GTACCTGTTA TGTAGCAAAA CTTGTGGCAG ACCATGGGTT CTTTTAGGAA
  AATAATGCAG TTTTTAGGTC AATCAACACT TCATAAAGCC AAGAATTTCA CTTTATTTTG
  TTCTCTTATA GGAACCCTGT CCAGCATCCC AACAGCTCTA ACCCGATGGA CAGAGGAATG
  CAAAGTTCTT GATGCTGAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	CAST/EiJ	MOLF/EiJ	PWD/PhJ
ss38489291	NES09742641	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	CAST/EiJ	MOLF/EiJ	PWD/PhJ
rs29297227					SNP	G	G	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38489291	NES09742641	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:150692724 () rs orientation: forward

Symbol	Name	Function Class
Huwe1	HECT, UBA and WWE domain containing 1	Intron
Rr694402	regulatory region 694402	997 bp proximal
Tssr162362	transcription start site region 162362	166 bp downstream
Tssr162363	transcription start site region 162363	123 bp upstream
Tssr162364	transcription start site region 162364	432 bp upstream