rs29297228 SNP Detail

Summary

• ID
  rs29297228
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  ChrX:150692194 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGAAGCTC TTAAGAATTA
  TAACTGAACT TCAACATTGT CTTGACCATA AGGATAAACA GTCCCTCATA AATAAGGTTG
  TGTGACCCAT AGTAAGTGAA ACAATTTTAA AATGAAAGAG TGAATATAAG TGCCTTATAA
  AGGTGTACAA CAAAGGCATT AATACCTAAC ATGGTACCTA GCATATCAAA GCTTCCTAGT
  R
  TTCAAGGAAC TAACTAAAGA ATAATATGCA GTTCAATCTC GAAGTTATCA AACTGACATG
  CTAATAAGAA TGGTAGTAAA GGTTTAGGTT CAGTATGATT AAAATCTACC CATAATCCTA
  TAAGTTTACT AGATGTACAT GCTCGATCTC ATGGTTAACA GACTTCTGTG GACTTGAAAG
  TGAAAGTGGT ACCTTACCAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38489292	NES09742640	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29297228					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38489292	NES09742640	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:150692194 () rs orientation: forward

Symbol	Name	Function Class
Huwe1	HECT, UBA and WWE domain containing 1	Intron
Rr694402	regulatory region 694402	1527 bp proximal
Tssr162362	transcription start site region 162362	342 bp upstream
Tssr162363	transcription start site region 162363	653 bp upstream
Tssr162364	transcription start site region 162364	962 bp upstream