rs29297229 SNP Detail

Summary

• ID
  rs29297229
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  ChrX:150692097 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCATGTTC ACTACCCTGG
  GAATCGCCAG CCTAACCCTC CTCTTATACT CCAGAGGTGA GTTTGTGTTG AAGCAGAATC
  AATGAGAAGT TGGATTCAAT GAAGCTCTTA AGAATTATAA CTGAACTTCA ACATTGTCTT
  GACCATAAGG ATAAACAGTC CCTCATAAAT AAGGTTGTGT GACCCATAGT AAGTGAAACA
  R
  TTTTAAAATG AAAGAGTGAA TATAAGTGCC TTATAAAGGT GTACAACAAA GGCATTAATA
  CCTAACATGG TACCTAGCAT ATCAAAGCTT CCTAGTGTTC AAGGAACTAA CTAAAGAATA
  ATATGCAGTT CAATCTCGAA GTTATCAAAC TGACATGCTA ATAAGAATGG TAGTAAAGGT
  TTAGGTTCAG TATGATTAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss38489293	NES09742639	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs29297229					SNP	A	A	A	A	A	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38489293	NES09742639	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:150692097 () rs orientation: forward

Symbol	Name	Function Class
Huwe1	HECT, UBA and WWE domain containing 1	Intron
Rr694402	regulatory region 694402	1624 bp proximal
Tssr162362	transcription start site region 162362	439 bp upstream
Tssr162363	transcription start site region 162363	750 bp upstream
Tssr162364	transcription start site region 162364	1059 bp upstream