rs29297231 SNP Detail

Summary

• ID
  rs29297231
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  ChrX:150691660 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCTAGGCC AAGGGGCCAG
  CATCTGAAGT GCCTAGAGAC ATCACTGTTG TCTTGAAAGT GGGCTGGGAA AAGGTAGGAT
  TACATTGAGG TGGTGGCATA ACCTATGGTT GTATCAGATC CTGAATTAGG TGTGAGAATG
  AGGGAGAAAG GAAAAAGATC ACATTTCCAT GTGAGCAAAG CCCAGGAGAC ATGGTTCTAC
  R
  CATGAACAGC CATGGAAGAA ATTTATTTTT GGCACTGACC CCTTTTGCAT ATTTTCCTTG
  CAGCAGACAT TCCCCCATCC CCAGGAAATA TCCCTACCAC CCACCCATTG ATGGTACGTC
  ATGCAGATCA CAGTTCCCTG ACACTGGGCA GTGGTTCTTC CACAACTCGT CTTACCCAGG
  GCATCGGTCG CAGTCAAAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38489295	NES09742636	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29297231					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38489295	NES09742636	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:150691660 () rs orientation: forward

Symbol	Name	Function Class
Huwe1	HECT, UBA and WWE domain containing 1	Intron
Tssr162362	transcription start site region 162362	876 bp upstream
Tssr162363	transcription start site region 162363	1187 bp upstream
Tssr162364	transcription start site region 162364	1496 bp upstream