rs29298115 SNP Detail

Summary

• ID
  rs29298115
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:149303311 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCATGAGT TCTTATTATT
  TGATCTCACG AATTAATCAT CCAATGACAA GTGAAACTAA TCCATAGCCT TGGAAGTAAA
  GCTAAGATGC TTCCTGCATC TTCCAGCACC TGTAGGCAAT TTAAAATCAA GATGAAGAGC
  TATCTATAGA TTCATGGGAC AAGGTGGGCA ACCTGAACTT TGCCAAGACA GTCACACTGG
  K
  TTGATGAAGT ATTCAAAAGA ATTATAAAGC CTCCAGCAGA AAGGTATGCT ATTTTATCTT
  TTGGCAGCCA TGGACATGCT TTTTCAGGCC CCAAAGCCCT TTACAAAGAG AGTTTATCAA
  GTCAAACAAA CAACCAAACA AGCAAATAAT CAAACAAACA AAAACAATGA AGGATCTTGA
  AAAGTAGAAA ATAAGACTTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38491797	NES09740882	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29298115					SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38491797	NES09740882	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:149303311 () rs orientation: forward

Symbol	Name	Function Class
Apex2	apurinic/apyrimidinic endonuclease 2	within coordinates
Gm61895	predicted gene, 61895	within coordinates
Rr6880	regulatory region 6880	683 bp proximal