rs29298116 SNP Detail

Summary

• ID
  rs29298116
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:149303261 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTGATAAA CATGCATATA
  CTCTGTTTCT CTAATAGGAA GTAGGTACAA AAGCATGAGT TCTTATTATT TGATCTCACG
  AATTAATCAT CCAATGACAA GTGAAACTAA TCCATAGCCT TGGAAGTAAA GCTAAGATGC
  TTCCTGCATC TTCCAGCACC TGTAGGCAAT TTAAAATCAA GATGAAGAGC TATCTATAGA
  Y
  TCATGGGACA AGGTGGGCAA CCTGAACTTT GCCAAGACAG TCACACTGGT TTGATGAAGT
  ATTCAAAAGA ATTATAAAGC CTCCAGCAGA AAGGTATGCT ATTTTATCTT TTGGCAGCCA
  TGGACATGCT TTTTCAGGCC CCAAAGCCCT TTACAAAGAG AGTTTATCAA GTCAAACAAA
  CAACCAAACA AGCAAATAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38491798	NES09740881	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29298116					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38491798	NES09740881	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:149303261 () rs orientation: forward

Symbol	Name	Function Class
Apex2	apurinic/apyrimidinic endonuclease 2	within coordinates
Gm61895	predicted gene, 61895	within coordinates
Rr6880	regulatory region 6880	733 bp proximal