rs29298117 SNP Detail

Summary

• ID
  rs29298117
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:149302558 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGTGCATT ATAGCCAATT
  GCTCGATTAT GTGAAGTACA TCAACAACAA GCAAGCCTCA AGGAAAAAAA TAACAGGGGA
  AAAAAGGAAT AATCTTTGGC TTAGTAAATG GAAAAACAAT TGTTAACCAT TTGGAATAAA
  AGTGTTTGAT AAGTATCTCA TGAGCTATAC AAAAATAATG ATTTTATTCA TACTTTTTCA
  R
  GAAATTATGA AATAACAAAG AAATTATAGA AAGTCTTCCT GATTAGAAAA TAATTTATTT
  TTAAAAATCT ACAGTGTAAA TTAATAATTA ATTTTTTTGA GACAGAGTCT TACCACATAG
  GGCTGACCTC AAATATATTA TGAAGAACAG GCTGACCTTG AACTTGTGAT TGTCTTTCTT
  TTCTCTTCCC AACTACTGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss38491799	NES09740904	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs29298117					SNP	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38491799	NES09740904	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:149302558 () rs orientation: forward

Symbol	Name	Function Class
Apex2	apurinic/apyrimidinic endonuclease 2	within coordinates
Gm61895	predicted gene, 61895	within coordinates
Rr6880	regulatory region 6880	1436 bp proximal